The following big alignment was produced by first running the following FASTA command
fasta -q -d 30 mgmstm1.aa s > fasta_out.30where "mgmstm1.aa" is one of the example sequences from the FASTA distribution and "s" is the FASTLIBS entry for the Swiss-Prot database (Version 30). Then, the following fmtseq command was executed:
fmtseq fasta_out.30 -fpretty -nametop -nameleft=11 -width=60 -idprefix=sp
-nocolspace -interline=3 '-gapout= ' -otemp
where the actual command was give on a single line containing all of
the options.
1. sp:GT8.7 transl. of pa875.con, 19 to 675, 243 aa. 2. sp:GTB1_MOUSE GLUTATHIONE S-TRANSFERASE GT8.7 (EC 2.5.1.1, 243 aa. 3. sp:GTB1_RAT GLUTATHIONE S-TRANSFERASE YB1 (EC 2.5.1.18), 243 aa. 4. sp:GTB1_CRILO GLUTATHIONE S-TRANSFERASE Y1 (EC 2.5.1.18), 243 aa. 5. sp:GTB3_MOUSE GLUTATHIONE S-TRANSFERASE GT9.3 (EC 2.5.1.1, 243 aa. 6. sp:GTB2_MOUSE GLUTATHIONE S-TRANSFERASE 5 (EC 2.5.1.18) (, 243 aa. 7. sp:GTB2_RAT GLUTATHIONE S-TRANSFERASE YB2 (EC 2.5.1.18), 243 aa. 8. sp:GTB_CAVPO GLUTATHIONE S-TRANSFERASE B (EC 2.5.1.18) (, 243 aa. 9. sp:GTM1_HUMAN GLUTATHIONE S-TRANSFERASE HB SUBUNIT 4 (EC, 243 aa. 10. sp:GTMU_MESAU GLUTATHIONE S-TRANSFERASE (EC 2.5.1.18) (CL, 243 aa. 11. sp:GTM4_HUMAN GLUTATHIONE S-TRANSFERASE MUSCLE (EC 2.5.1, 243 aa. 12. sp:GTB3_RAT GLUTATHIONE S-TRANSFERASE YB3 (EC 2.5.1.18), 243 aa. 13. sp:GTM5_HUMAN GLUTATHIONE S-TRANSFERASE TESTIS/BRAIN (EC, 243 aa. 14. sp:GT2_CHICK GLUTATHIONE S-TRANSFERASE 2 (EC 2.5.1.18) (, 243 aa. 15. sp:GT26_FASHE GLUTATHIONE S-TRANSFERASE 26 KD (EC 2.5.1.1, 243 aa. 16. sp:GT27_FASHE GLUTATHIONE S-TRANSFERASE 26 KD (EC 2.5.1.1, 243 aa. 17. sp:GT28_FASHE GLUTATHIONE S-TRANSFERASE 26 KD (EC 2.5.1.1, 243 aa. 18. sp:GT27_SCHMA GLUTATHIONE S-TRANSFERASE 26 KD (EC 2.5.1.1, 243 aa. 19. sp:GT26_SCHJA GLUTATHIONE S-TRANSFERASE 26 KD (EC 2.5.1.1, 243 aa. 20. sp:GT26_SCHMA GLUTATHIONE S-TRANSFERASE 26 KD (EC 2.5.1.1, 243 aa. 21. sp:GTP_BOVIN GLUTATHIONE S-TRANSFERASE P (EC 2.5.1.18) (, 243 aa. 22. sp:GTP_MOUSE GLUTATHIONE S-TRANSFERASE P (EC 2.5.1.18) (, 243 aa. 23. sp:GTP_HUMAN GLUTATHIONE S-TRANSFERASE P (EC 2.5.1.18) (, 243 aa. 24. sp:GTP_RAT GLUTATHIONE S-TRANSFERASE P (EC 2.5.1.18) (, 243 aa. 25. sp:GTP_CAEEL GLUTATHIONE S-TRANSFERASE P (EC 2.5.1.18), 243 aa. 26. sp:GTP_PIG GLUTATHIONE S-TRANSFERASE P (EC 2.5.1.18) (, 243 aa. 27. sp:GTA1_RAT GLUTATHIONE S-TRANSFERASE YA (EC 2.5.1.18), 243 aa. 28. sp:GTA2_MOUSE GLUTATHIONE S-TRANSFERASE YA CHAIN (EC 2.5, 243 aa. 29. sp:GTA2_RAT GLUTATHIONE S-TRANSFERASE YA (EC 2.5.1.18), 243 aa. 30. sp:GTA1_MOUSE GLUTATHIONE S-TRANSFERASE GT41A (EC 2.5.1.1, 243 aa. GT8.7 PMILGYWNVRGLTHPIRMLLEYTDSSYDEKRYTMGDAPDFDRSQWLNEKFKL G LDFP GTB1_MOUSE PMILGYWNVRGLTHPIRMLLEYTDSSYDEKRYTMGDAPDFDRSQWLNEKFKL G LDFP GTB1_RAT PMILGYWNVRGLTHPIRLLLEYTDSSYEEKRYAMGDAPDYDRSQWLNEKFKL G LDFP GTB1_CRILO PMILGYWNVRGLTNPIRLLLEYTDSSYEEKKYTMGDAPDSDRSQWLNEKFKL G LDFP GTB3_MOUSE PMTLGYWNTRGLTHSIRLLLEYTDSSYEEKRYVMGDAPNFDRSQWLSEKFNL G LDFP GTB2_MOUSE PMTLGYWDIRGLAHAIRLLLEYTDTSYEDKKYTMGDAPDYDRSQWLSEKFKL G LDFP GTB2_RAT PMTLGYWDIRGLAHAIRLFLEYTDTSYEDKKYSMGDAPDYDRSQWLSEKFKL G LDFP GTB_CAVPO PMTLGYWNIRGLTHPIRLILEYTNSGYEEKRYNMGDAPDYDRSQWLNEKFKL G LDFP GTM1_HUMAN PMILGYWDIRGLAHAIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKL G LDFP GTMU_MESAU PVTLGYWDIRGLAHAIRLLLEYTDTSYEEKKYTMGDAPNFDRSQWLNEKFKL G LDFP GTM4_HUMAN PMTLGYWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKL G LDFP GTB3_RAT PMTLGYWDIRGLAHAIRLLLEYTDSSYEEKRYTMGDAPDFDRSQWLNEKFKL G LDFP GTM5_HUMAN MVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKL D LDFP GT2_CHICK LGYWDIRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPSDWTNEKEKL G LDFP GT26_FASHE PAKLGYWKIRGLQQPVRLLLEYLGEEYEEHLY GRD DREKWFGDKFNM G LDLP GT27_FASHE WKLRGLAQPVRLFLEYLGEEYEEHLY GRD DREKWMSEKFNM G LDLP GT28_FASHE IRGLQQPVRLFLEYLGEEYEEHLYGRND REKWLGDKFNM G LDLP GT27_SCHMA LGYWKIKGLVQPTRLLLEYLGERYEERLY DRNDGDV WRNEKFKL G LDFP GT26_SCHJA ILGYWKIKGLVQPTRLLLEYLEEKYEEHLYER DEGD KWRNKKFEL G LEFP GT26_SCHMA FGYWKVKGLVQPTRLLLEHLEETYEERAY DRNEID AWSNDKFKL G LEFP GTP_BOVIN PYTIVYFPVQGRCEAMRMLLADQGQSWKEEVVAM QSWLQGPLKA S CLYG GTP_MOUSE PYTIVYFPVRGRCEAMRMLLADQGQSWKEEVVTI DTWMQGLLKP T CLYG GTP_HUMAN PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTV ETWQEGSLKA S CLYG GTP_RAT PYTIVYFPVRGRCEATRMLLADQGQSWKEEVVTI DV WLQGSLKS T CLYG GTP_CAEEL LTYFDIHGLAEPIRLLLADKQVAYEDHRVTY EQWADIKPKM IFG GTP_PIG PYTITYFPVRGRCEAMRMLLADQDQSWKEEVVTMETWPPL KP S CLFR GTA1_RAT VLHYFNARGRMECIRWLLAAAGVEFDEK FIQSPEDLEKLKKDGN LMFD GTA2_MOUSE VLHYFNARGRMECIRWLLAAAGVEFEEK FIQSPEDLEKLKKDGN LMFD GTA2_RAT VLHYFNARGRMECIRWLLAAAGVEFEEK LIQSPEDLEKLK KD GNLMFD GTA1_MOUSE VLHYFNARGRMECIRWLLAAAGVEFEEK FIQSPEDLEKLKKDGN LMFD GT8.7 NLPYL IDGSHKITQSNAILRYLARKHHLDGETEEERIRADIVENQVMD TRM QLIML GTB1_MOUSE NLPYL IDGSHKITQSNAILRYLARKHHLDGETEEERIRADIVENQVMD TRM QLIML GTB1_RAT NLPYL IDGSRKITQSNAIMRYLARKHHLCGETEEERIRADIVENQVMD NRM QLIML GTB1_CRILO NLPYL IDGSHKITQSNAILRYIARKHNLCGETEEERIRVDIVENQAMD TRM QLIML GTB3_MOUSE NLPYL IDGSHKVTQSNAILRYLGRKHNLCGETEEERIRVDTLENQVMD TRI QLMIV GTB2_MOUSE NLPYL IDGSHKITQSNAILRYLARKHNLCGETEEERIRVDILENQAMD TRI QLAMV GTB2_RAT NLPYL IDGSHKITQSNAILRYLGRKHNLCGETEEERIRVDVLENQAMD TRL QLAMV GTB_CAVPO NLPYL IDGTHKLTQSNAILRYIARKHNLCGVTEEETIRMDILENQVMD IRM QLIML GTM1_HUMAN NLPYL IDGAHKITQSNAILCYIARKHNLCGETEEEKIRVDILENQTMD NHM QLGMI GTMU_MESAU NLPYL IDGSHKITQSNAILRYIARKHDLCGETEEERIQLDILENQAMD TRM QLAMV GTM4_HUMAN NLPYL IDGTHKITQSNAILRYIARKHNLCGESEKEQIREDILENQFMD SRM QLAKL GTB3_RAT NLPYL IDGSHKITQSNAILRYLGRKHNLCGETEEERIRVDILENQLMD NRM VLARL GTM5_HUMAN NLPYL LDGKNKITQSNAILRYIARKHNMCGETEEEKIRVDIIENQVMD FRT QLIRL GT2_CHICK NLPYL IDGDVKLTQSNAILRYIARKHNMCGETEVEKQRVDVLENHLMD LRM AFARL GT26_FASHE NLPYY IDDKCKLTQSVAIMRYIADKHGMLGTTPEERARISMIEGAAMD LRM GFVRV GT27_FASHE NLPYY IDDKCKLTQSVAIMRYIADKHGMLGTTPEERARISMIEGAAMD LRI GFGRV GT28_FASHE NLPYY IDDKCKLTQSVAIMRYIADKHGMLGSTPEERARISMIEGAAMD LRI GFGLT GT27_SCHMA NLPYY IDGDVKLTQSMAILRYIADKHNMLGGCPKERAEISMLEGAILD IRY GVSRI GT26_SCHJA NLPYY IDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLD IRY GVSRI GT26_SCHMA NLPYY IDGDFKLTQSMAIIRYIADKHNMLGACPKERAEISMLEGAVLD IRM GVLRI GTP_BOVIN QLPKF QDGDLTLYQSNAILRHLGRTLGLYGKDQQEAALVDMVNDGVED LRC KYVSL GTP_MOUSE QLPKF EDGDLTLYQSNAILRHLGRSLGLYGKNQREAAQMDMVNDGVED LRG KYVTL GTP_HUMAN QLPKF QDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVED LRC KYISL GTP_RAT QLPKF EDGDLTLYQSNAILRHLGRSLGLYGKDQKEAALVDMVNDGVED LRC KYGTL GTP_CAEEL QVPCL LSGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRD LHT KYTTM GTP_PIG QLPKF QDGDLTLYQSNAILRHLGRSFGLYGKDQKEAALVDMVNDGVED LRC KYATL GTA1_RAT QVPMVEIDG MKLAQTRAILNYIATKYDLYGKDMKERALIDMYTEGILDLTEM IMQLV GTA2_MOUSE QVPMVEIDG MKLAQTRAILNYIATKYDLYGKDMKERALIDMYSEGILDLTEMIGQLV L GTA2_RAT QVPMVEIDG MKLAQTRAILNYIATKYDLYGKDMKERALIDMYSEGILD LTE MIIQL GTA1_MOUSE QVPMVEIDG MKLVQTRAILNYIATKYDLYGKDMKERALIDMYTEGILDLTEMIGQLV L GT8.7 CYNPDFEKQKPEFLK TI PEKM K LYSEFL GK RPWFAGDKVTY GTB1_MOUSE CYNPDFEKQKPEFLK TI PEKM K LYSEFL GK RPWFAGDKVTY GTB1_RAT CYNPDFEKQKPEFLK TI PEKM K LYSEFL GK RPWFAGDKVTY GTB1_CRILO CYNPDFEKQKPEFLK TI PEKM K MYSEFL GK RPWFAGDKVTL GTB3_MOUSE CCSPDFEKQKPEFLK AI PEKM K LYSEFL GK RPWFAGDKVTY GTB2_MOUSE CYSPDFEKKKPEYLE GL PEKM K LYSEFL GK QPWFAGNKVTY GTB2_RAT CYSPDFERKKPEYLE GL PEKM K LYSEFL GK QPWFAGNKITY GTB_CAVPO CYSPDFEQKKAEFLE GI PDKM K LFSQFL GK LPWFAGNKLTY GTM1_HUMAN CYNPEFEKLKPKYLE EL PEKL K LYSEFL GK RPWFAGNKITF GTMU_MESAU CYSPDFEKRKPEYLE GL PEKM K LYSEFL GK RSWFAGDKITY GTM4_HUMAN CYDPDFEKLKPEYLQ AL PEML K LYSQFL GK QPWFLGDKITF GTB3_RAT CYNPDFEKLKPGYLE QL PGMM R LYSEFL GK RPWFAGDKITF GTM5_HUMAN CYSSDHEKLKPQYLE EL PGQL K QFSMFL WK FSWFAGEKLTF GT2_CHICK CYSPDFEKLKPAYLE LL PGKL R QLSRFL GS RSWFVGDKLTF GT26_FASHE CYNPKFEEVKGDYLK EL PTTL K MWSNFL GD RHYLTGSPVSH GT27_FASHE CYNPKFEEVKEEYVK EL PKTL K MWSDFL GD RHYLTGSSVSH GT28_FASHE CYNPKFEELKGDYLK GL PTTL K MWSDFL GD RQYLIGSSVSH GT27_SCHMA AYNKEFETLKVDFLN QL PGML K MFEDRL SH NTYLNGDKVTH GT26_SCHJA AYSKDFETLKVDFLS KL PEML K MFEDRL CH KTYLNGDHVTH GT26_SCHMA AYNKEYETLKVDFLN KL PGRL K MFEDRL SN KTYLNGNCVTH GTP_BOVIN IYT NYEAGKEDYVK AL PQHL K PFETLLSQNKGG QAFIVGDQISF GTP_MOUSE IYT NYENGKNDYVK AL PGHL KPFETLLSQNQ GG KAFIVGDQISF GTP_HUMAN IYT NYEAGKDDYVK AL PGQL KPFETLLSQNQ GG KTFIVGDQISF GTP_RAT IYT NYENGKDDYVK AL PGHL KPFETLLSQNQ GG KAFIVGNQISF GTP_CAEEL IYR NYEDGKAPYIK DVLPGELARLEK LFHTYK NG EHYVIGDKESY GTP_PIG IYT NYEAGKEKYVK EL PEHL KPFETLLSQNQ GG QAFVVGSQISF GTA1_RAT ICPPDQKEAKTALAKDRTK NRYL P AFEKVL KSHGQDYLVGNKLTR GTA2_MOUSE C PPDQREAKTALAKDRTK NRYL P AFEKVL KSHGQDYLVGNRLTR GTA2_RAT VIC PPDQREAKTALAKDRTK NRYL P AFEKVL KSHGQDYLVGNRLTR GTA1_MOUSE C PPDQREAKTALAKDRTK NRYL P AFEKVL KSHGQDYLVGNRLTR GT8.7 VDFLAYDILDQYRMFEPKCLDAFPNLRDFLARFEGLKKISAYMKSSRYIATPIFSKMAHW GTB1_MOUSE VDFLAYDILDQYRMFEPKCLDAFPNLRDFLARFEGLKKISAYMKSSRYIATPIFSKMAHW GTB1_RAT VDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSRYLSTPIFSKLAQW GTB1_CRILO CGFLAYDVLDQYQMFEPKCLDPFPNLKDFLARFEGLKKISAYMKTSRFLRRPIFSKMAQW GTB3_MOUSE VDFLAYDILDQYRMFEPKCLDAFPNLRDFLARFEGLKKISAYMKSSRFLPRPVFTKIAQW GTB2_MOUSE VDFLVYDVLDQHRIFEPKCLDAFPNLKDFMGRFEGLKKISDYMKSSRFLSKPIFAKMAFW GTB2_RAT VDFLVYDVLDQHRIFEPKCLDAFPNLKDFVARFEGLKKISDYMKSGRFLSKPIFAKMAFW GTB_CAVPO VDFLAYDVLDQYRMLEPKCLEAFPNLKDFISRFEGLEKISSYMKSSRFLPKPLFSKFAFW GTM1_HUMAN VDFLVYDVLDLHRIFEPKCLDAFPNLKDFISRFEGLEKISAYMKSSRFLPRPVFSKMAVW GTMU_MESAU VDFLIYDVLDQHRIFAPKCLDAFPNLKDFLARFEGLKKISDYMKSSRFSCKQIFAKMAVW GTM4_HUMAN VDFIAYDVLERNQVFEPSCLDAFPNLKDFISRFEGLEKISAYMKSSRFLPRPVFTKMAVW GTB3_RAT VDFIAYDVLERNQVFEATCLDAFPNLKDFIARFEGLKKISDYMKSSRFLPRPLFTKMAIW GTM5_HUMAN VDFLTYDILDQNRIFDPKCLDEFPNLKAFMCRFEALEKIAAYLQSDQFCKMPINNKMAQW GT2_CHICK VDFLAYDVLDQQRMFVPDCPELQGNLSQFLQRFEALEKISAYMRSGRFMKAPIFWYTALW GT26_FASHE VDFMVYEALDCIRYLAPQCLEDFPKLKEFKSRIEDLPKIKAYMESEKFIKWPLNSWIA GT27_FASHE VDFMLYETLDSIRYLAPHCLDEFPKLKEFKSRIEALPKIKAYMESKRFIKWPL GT28_FASHE VDFMVYEALDCIRYLAPQCLDDFPKLKEFKSRIEDLPKIKEYMKSERFIKWPLHS GT27_SCHMA PDFMLYDALDVVLYMDPKCLDNFPKLISFKQRIENLPPIKNYLNSNRYIKWPL GT26_SCHJA PDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPL GT26_SCHMA PDFMLYDALDVVLYMDSQCLNEFPKLVSFKKCIEDLPQIKNYLNSSRYIKWPL GTP_BOVIN ADYNLLDLLRIHQVLAPSCLDSFPLLSAYVARLNSRPKLKAFLASPEHMNRPI GTP_MOUSE ADYNLLDLLLIHQVLAPGCLDNFPLLSAYVARLSARPKIKAFLSSPEHVNRPI GTP_HUMAN ADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVNLPI GTP_RAT ADYNLLDLLLVHQVLAPGCLDNFPLLSAYVARLSARPKIKAFLSSPDHLNRPI GTP_CAEEL ADYVLFEELDIHLILTPNALDGVPALKKFHERFAERPNIKAYLNKRAAINPPV GTP_PIG ADYNLLDLLRIHQVLNPSCLDAFPLLSAYVARLSARPKIKAFLASPEHVNRPI GTA1_RAT VDIHLLELLLYVEEFDASLLTSFPLLKAFKSRISSLPNVKKFLQPGSQRKLPMDAKQIEE GTA2_MOUSE VDIHLLEVLLYVEEFDASLLTPFPLLKAFKSRISSLPNVKKFLQPGSQRKPPMDAKQIQE GTA2_RAT VDIHLLELLLYVEEFDASLLTSFPLLKAFKSRISSLPNVKKFLQ GTA1_MOUSE VDVHLLELLLYVEELDASLLTPFPLLKAFKSRISSLPNVKKFLQPGSQRKPPLDAKQIEE GT8.7 SNK GTB1_MOUSE SNK GTB1_RAT SNK GTB1_CRILO SNK GTB3_MOUSE G GTB2_MOUSE NPK GTB2_RAT NPK GTB_CAVPO NNK GTM1_HUMAN GNK GTMU_MESAU NSK GTM4_HUMAN GNK GTB3_RAT GSK GTM5_HUMAN GNK GT2_CHICK NNK GT26_FASHE GT27_FASHE GT28_FASHE GT27_SCHMA GT26_SCHJA GT26_SCHMA GTP_BOVIN GTP_MOUSE GTP_HUMAN GTP_RAT GTP_CAEEL GTP_PIG GTA1_RAT ARK GTA2_MOUSE ARK GTA2_RAT GTA1_MOUSE ARK