#include "gn/gnDefs.h"#include <string>#include <fstream>#include <vector>#include "gn/gnFileSource.h"#include "gn/gnFileContig.h"#include "gn/gnSourceSpec.h"#include "gn/gnSequence.h"Go to the source code of this file.
Compounds | |
| class | gnGBKSource |
| gnGBKSource is a GenBank sequence file reader. More... | |
Variables | |
| const uint32 | SEQ_COLUMN_WIDTH = 80 |
| const uint32 | SEQ_HEADER_NAME_LENGTH = 11 |
| const uint32 | SEQ_SUBTAG_COLUMN = 5 |
| const uint32 | SEQ_LOCUS_CIRCULAR_COLUMN = 43 |
| const uint32 | SEQ_LOCUS_NAME_COLUMN = 13 |
| const uint32 | SEQ_LOCUS_NAME_LENGTH = 10 |
| const uint32 | SEQ_LOCUS_SIZE_LENGTH = 7 |
| const uint32 | SEQ_LOCUS_DNATYPE_OFFSET = 33 |
| const uint32 | SEQ_LOCUS_DNATYPE_LENGTH = 7 |
| const uint32 | SEQ_LOCUS_DIVCODE_OFFSET = 52 |
| const uint32 | SEQ_LOCUS_DIVCODE_LENGTH = 3 |
| const uint32 | SEQ_LOCUS_DATE_OFFSET = 62 |
| const uint32 | SEQ_LOCUS_DATE_LENGTH = 11 |
| const uint32 | SEQ_FEATURE_LOC_OFFSET = 21 |
| const uint32 | SEQ_BASES_INDEX_END = 9 |
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Definition at line 40 of file gnGBKSource.h. |
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Definition at line 26 of file gnGBKSource.h. Referenced by gnGBKSource::Write(). |
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Definition at line 39 of file gnGBKSource.h. Referenced by gnGBKSource::Write(). |
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Definition at line 27 of file gnGBKSource.h. Referenced by gnSEQSource::ParseStream(), and gnGBKSource::ParseStream(). |
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Definition at line 29 of file gnGBKSource.h. |
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Definition at line 38 of file gnGBKSource.h. |
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Definition at line 37 of file gnGBKSource.h. |
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Definition at line 36 of file gnGBKSource.h. |
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Definition at line 35 of file gnGBKSource.h. |
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Definition at line 34 of file gnGBKSource.h. |
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Definition at line 33 of file gnGBKSource.h. |
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Definition at line 30 of file gnGBKSource.h. Referenced by gnSEQSource::ParseStream(), and gnGBKSource::ParseStream(). |
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Definition at line 31 of file gnGBKSource.h. Referenced by gnSEQSource::ParseStream(), gnGBKSource::ParseStream(), and gnGBKSource::Write(). |
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Definition at line 32 of file gnGBKSource.h. Referenced by gnGBKSource::Write(). |
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Definition at line 28 of file gnGBKSource.h. Referenced by gnSEQSource::ParseStream(), gnGBKSource::ParseStream(), and gnGBKSource::Write(). |
1.3-rc3